SEQALN_IO Struct Reference

#include <seqaln.h>

List of all members.

Public Attributes
FILE *	STDIN
FILE *	STDOUT
FILE *	STDERR

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Member Data Documentation

FILE * SEQALN_IO::STDIN

Referenced by dyaln::initParameter(), load_seq(), load_seq_lite(), main(), parseargs(), parseargs_str(), and parseargs_str_new().

FILE * SEQALN_IO::STDOUT

Referenced by fddeclump(), fsdeclump(), getpvalue(), mgsaln::if(), dyaln::initParameter(), load_seq_lite(), lsdeclump(), main(), nextpval(), norm_gen(), dyaln::outputAln(), parseargs(), parseargs_str(), parseargs_str_new(), print_trace(), prpt_row(), ptrace(), pvlocalS(), pvsrlocalS(), rpt_align(), rpt_alignment(), rpt_row(), rpt_scores(), rpt_version(), srlsdeclump(), tandem_gen(), topscore(), trace(), trlocalS(), trlsdeclump(), trrpt_alignment(), trrpt_scores(), trtrace(), and mgsaln::while().

FILE * SEQALN_IO::STDERR

Referenced by getmaxS(), getpvalue(), dyaln::initParameter(), load_distrib(), load_mat(), load_pro(), load_seq(), load_seq_lite(), main(), nextpval(), parseargs(), parseargs_str(), parseargs_str_new(), ptrace(), pvlocalS(), pvsrlocalS(), results_init(), rpt_align(), rpt_alignment(), srgetmaxS(), trace(), trrpt_alignment(), and trtrace().

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The documentation for this struct was generated from the following files:

• seqaln/seqaln/kzaln/seqaln.h
• seqaln/seqaln/src/seqaln.h