#include <seqaln.h>
Public Attributes | |
| FILE * | STDIN |
| FILE * | STDOUT |
| FILE * | STDERR |
| FILE * SEQALN_IO::STDIN |
Referenced by dyaln::initParameter(), load_seq(), load_seq_lite(), main(), parseargs(), parseargs_str(), and parseargs_str_new().
| FILE * SEQALN_IO::STDOUT |
Referenced by fddeclump(), fsdeclump(), getpvalue(), mgsaln::if(), dyaln::initParameter(), load_seq_lite(), lsdeclump(), main(), nextpval(), norm_gen(), dyaln::outputAln(), parseargs(), parseargs_str(), parseargs_str_new(), print_trace(), prpt_row(), ptrace(), pvlocalS(), pvsrlocalS(), rpt_align(), rpt_alignment(), rpt_row(), rpt_scores(), rpt_version(), srlsdeclump(), tandem_gen(), topscore(), trace(), trlocalS(), trlsdeclump(), trrpt_alignment(), trrpt_scores(), trtrace(), and mgsaln::while().
| FILE * SEQALN_IO::STDERR |
Referenced by getmaxS(), getpvalue(), dyaln::initParameter(), load_distrib(), load_mat(), load_pro(), load_seq(), load_seq_lite(), main(), nextpval(), parseargs(), parseargs_str(), parseargs_str_new(), ptrace(), pvlocalS(), pvsrlocalS(), results_init(), rpt_align(), rpt_alignment(), srgetmaxS(), trace(), trrpt_alignment(), and trtrace().
1.5.6