InputColumn Struct Reference

List of all members.

Public Member Functions
	InputColumn ()
Public Attributes
string	seqid
string	seqlen
string	alnb
string	alne
string	cov
string	alnlen
string	identical
Friends
ostream &	operator<< (ostream &ous, const InputColumn &ic)

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Detailed Description

A better implementation to check chimera

the input table needs to be have specified column names. to make this program more flexible on the input column names of the input table. This is for the half alignment table, default column names. The order of the columns are not essential.

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Constructor & Destructor Documentation

InputColumn::InputColumn

(

)

[inline]

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Friends And Related Function Documentation

ostream& operator<<	(	ostream &	ous,
		const InputColumn &	ic
	)			[friend]

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Member Data Documentation

string InputColumn::seqid

Referenced by findChimera(), operator<<(), and storeInTable().

string InputColumn::seqlen

Referenced by findChimera(), operator<<(), and storeInTable().

string InputColumn::alnb

Referenced by findChimera(), operator<<(), and storeInTable().

string InputColumn::alne

Referenced by findChimera(), operator<<(), and storeInTable().

string InputColumn::cov

Referenced by findChimera(), and operator<<().

string InputColumn::alnlen

Referenced by findChimera(), and operator<<().

string InputColumn::identical

Referenced by findChimera(), and operator<<().

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The documentation for this struct was generated from the following file:

• range/checkchimera.cpp