pvlocalS.c File Reference

#include <stdio.h>
#include <malloc.h>
#include <math.h>
#include "seqaln.h"
#include "mccaldon.h"

Functions
	pvlocalS (struct SEQALN_SEQUENCE *seq1, struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring, struct SEQALN_RESULTS *results, struct SEQALN_IO *io)

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Function Documentation

pvlocalS	(	struct SEQALN_SEQUENCE *	seq1,
		struct SEQALN_SEQUENCE*	seq2,
		struct SEQALN_CONSTANTS *	scoring,
		struct SEQALN_RESULTS *	results,
		struct SEQALN_IO *	io
	)

References SEQALN_RESULTS::aligned, asc2num(), SEQALN_RESULTS::bestS, SEQALN_CONSTANTS::Debug, SEQALN_RESULTS::F, getpvalue(), SEQALN_PVALUE::hist, LINEAR, localS(), lsdeclump(), make_seq(), max, SEQALN_CONSTANTS::memuse, SEQALN_CONSTANTS::naligns, SEQALN_PVALUE::ndeclumps, SEQALN_CONSTANTS::ndeclumps, newmem(), SEQALN_PVALUE::nhist, NONMATRIX, SEQALN_PVALUE::nsims, SEQALN_RESULTS::pvalue, results_init(), SEQALN_RESULTS::S, seqaln_dnadis, seqaln_mccaldon, SEQALN_IO::STDERR, SEQALN_IO::STDOUT, SEQALN_CONSTANTS::stype, and trace().

Referenced by main().