#include <stdio.h>#include <malloc.h>#include <math.h>#include "seqaln.h"#include "mccaldon.h"Functions | |
| pvlocalS (struct SEQALN_SEQUENCE *seq1, struct SEQALN_SEQUENCE *seq2, struct SEQALN_CONSTANTS *scoring, struct SEQALN_RESULTS *results, struct SEQALN_IO *io) | |
| pvlocalS | ( | struct SEQALN_SEQUENCE * | seq1, | |
| struct SEQALN_SEQUENCE* | seq2, | |||
| struct SEQALN_CONSTANTS * | scoring, | |||
| struct SEQALN_RESULTS * | results, | |||
| struct SEQALN_IO * | io | |||
| ) |
References SEQALN_RESULTS::aligned, asc2num(), SEQALN_RESULTS::bestS, SEQALN_CONSTANTS::Debug, SEQALN_RESULTS::F, getpvalue(), SEQALN_PVALUE::hist, LINEAR, localS(), lsdeclump(), make_seq(), max, SEQALN_CONSTANTS::memuse, SEQALN_CONSTANTS::naligns, SEQALN_PVALUE::ndeclumps, SEQALN_CONSTANTS::ndeclumps, newmem(), SEQALN_PVALUE::nhist, NONMATRIX, SEQALN_PVALUE::nsims, SEQALN_RESULTS::pvalue, results_init(), SEQALN_RESULTS::S, seqaln_dnadis, seqaln_mccaldon, SEQALN_IO::STDERR, SEQALN_IO::STDOUT, SEQALN_CONSTANTS::stype, and trace().
Referenced by main().
1.5.6