misc.h File Reference

Go to the source code of this file.

Defines
#define	NORETURN
#define	CLEN(s)   (sizeof((s))-1)
#define	ZFREE(p)   /*CONSTCOND*/do{free(p);(p)=0;}while(0)
#define	RCSID(id)   static const char rcsid[] = id
#define	MAX(x, y)   ((x) > (y) ? (x) : (y))
#define	MIN(x, y)   ((x) < (y) ? (x) : (y))
#define	ICEIL(x, y)   ((((x)-1)/(y))+1)
Functions
void	fatal (const char *msg) NORETURN
void	fatalf (const char *fmt,...) NORETURN
void	fatalfr (const char *fmt,...) NORETURN
void	debugf (const char *fmt,...)
void	debugff (const char *fmt,...)
FILE *	ckpopen (const char *name, const char *mode)
void	ckpclose (FILE *)
FILE *	ckopen (const char *name, const char *mode)
void *	ckalloc (size_t amount)
void *	ckallocz (size_t amount)
void *	ckfree (void *p)
bool	same_string (const char *s, const char *t)
char *	copy_string (const char *s)
char *	copy_substring (const char *s, int n)
long	ckftell (FILE *)
int	ckfseek (FILE *, long, int)
void *	ckrealloc (void *, size_t)
Variables
int	psublast_debug

---

Define Documentation

#define CLEN

(

s

)

(sizeof((s))-1)

#define ICEIL	(	x,
		y		)	((((x)-1)/(y))+1)

#define MAX	(	x,
		y		)	((x) > (y) ? (x) : (y))

#define MIN	(	x,
		y		)	((x) < (y) ? (x) : (y))

#define NORETURN

#define RCSID

(

id

)

static const char rcsid[] = id

#define ZFREE

(

p

)

/*CONSTCOND*/do{free(p);(p)=0;}while(0)

---

Function Documentation

void* ckalloc

(

size_t

amount

)

References fatalf().

Referenced by add_word(), align_get_dist(), align_path(), bld_table(), ckallocz(), copy_string(), copy_substring(), exon_cores(), extend_bw(), extend_fw(), extend_hit(), get_strargval(), greedy(), link_to_data_list(), new_exon(), new_splice(), pluri_align(), print_align_blk(), print_align_lat(), splice(), splice_acceptor(), splice_acceptor_uni(), splice_donor(), splice_donor_uni(), Xextend_bw(), and Xextend_fw().

void* ckallocz

(

size_t

amount

)

References ckalloc().

void* ckfree

(

void *

p

)

int ckfseek	(	FILE *	,
		long	,
		int
	)

References fatalfr().

long ckftell

(

FILE *

)

References fatalfr().

FILE* ckopen	(	const char *	name,
		const char *	mode
	)

References fatalfr().

void ckpclose

(

FILE *

)

References fatalfr().

FILE* ckpopen	(	const char *	name,
		const char *	mode
	)

References fatalfr().

void* ckrealloc	(	void *	,
		size_t
	)

References fatal().

char* copy_string

(

const char *

s

)

References ckalloc().

char* copy_substring	(	const char *	s,
		int	n
	)

References ckalloc().

void debugf	(	const char *	fmt,
			...
	)

References print_argv0(), and psublast_debug.

void debugff	(	const char *	fmt,
			...
	)

References print_argv0(), and psublast_debug.

void fatal

(

const char *

msg

)

References fatalf().

Referenced by cds_range(), check_consistency_intron_ori(), ckrealloc(), complement_exons(), exon_cores(), find_ends(), find_previous(), IDISPLAY(), main(), print_align_header_n(), print_exons(), print_pipmaker_exons(), stepct(), and sync_slide_intron().

void fatalf	(	const char *	fmt,
			...
	)

References print_argv0().

Referenced by ck_argc(), ckalloc(), ckargs(), fatal(), and is_DNA().

void fatalfr	(	const char *	fmt,
			...
	)

References print_argv0().

Referenced by ckfseek(), ckftell(), ckopen(), ckpclose(), and ckpopen().

bool same_string	(	const char *	s,
		const char *	t
	)

---

Variable Documentation

int psublast_debug

Referenced by debugf(), and debugff().