i_mpvlocalS.c File Reference

#include <stdio.h>
#include "seqaln.h"

Functions
int	main (int argc, argv)

---

Function Documentation

int main	(	int	argc,
		argv
	)

References SEQALN_CONSTANTS::allscores, SEQALN_RESULTS::bestS, SEQALN_CONSTANTS::btype, SEQALN_PVALUE::coeff, SEQALN_CONSTANTS::cutoff, SEQALN_SEQUENCE::fptr, FULL, SEQALN_PVALUE::gamma, SEQALN_CONSTANTS::gamma, gen_align(), SEQALN_SEQUENCE::len, LINEAR, load_seq(), LOCAL, localS(), lsdeclump(), MATRIX, SEQALN_CONSTANTS::memuse, SEQALN_CONSTANTS::mtype, SEQALN_RESULTS::naligns, newmem(), nextpval(), SEQALN_PVALUE::npvals, SEQALN_PVALUE::p, SEQALN_CONSTANTS::p, parseargs(), print_trace(), SEQALN_CONSTANTS::ptype, SEQALN_PVALUE::pvalue, PVALUE, SEQALN_RESULTS::pvalue, pvlocalS(), SEQALN_CONSTANTS::randfile, readGFSR(), results_init(), rpt_align(), rpt_scores(), SEQALN_CONSTANTS::rptalign, SEQALN_CONSTANTS::rptboth, SEQALN_CONSTANTS::rptmat, SEQALN_CONSTANTS::rptscore, SEQALN_CONSTANTS::rpttrace, seq1, seq2, SIMILARITY, SQUARE, SEQALN_CONSTANTS::stats, SEQALN_IO::STDERR, SEQALN_IO::STDIN, SEQALN_IO::STDOUT, SEQALN_CONSTANTS::stype, trace(), SEQALN_CONSTANTS::traceupper, and writeGFSR().