Here is a list of all file members with links to the files they belong to:

- b -

• bad : alignment.h , subcluster.cpp
• BAND : seqaln.h
• bcd2num() : util.h , util.c , util.h
• best : alignment.h
• Best_pair() : oldbionj.c
• bestincol() : bestincol.c
• bestinrow() : bestinrow.c
• black : Esambl.h
• bld_table() : sim4b1.cpp , sim4b1.h
• BLINE : align.cpp
• BLMODeL_H : Blmodel.h
• BLOSUM62 : blast.h , matrix.h , MSPcrunch.h , prtMatrix.h , matrix.h , MSPcrunch.h , prtMatrix.h
• BLOSUM62_12 : prtMatrix.h , blast.h , matrix.h , MSPcrunch.h , prtMatrix.h , matrix.h , MSPcrunch.h
• bmatch() : sim4b1.cpp
• bootstrap() : dbaln_fungalbt.cpp
• BOTH : sim4.h
• Branch_length() : oldbionj.c
• breakonecl() : breakcl.cpp
• breakString() : Gmapres.h , Gmapres.cpp
• brkpt() : util.h , util.c , util.h
• BTYPE : seqaln.h
• bufferAheadTargetProteins() : chimeradetect_mysql.cpp
• bufferAllProteins() : dbaln_fungalrmsimp.cpp
• bufferGenomic() : dbaln.cpp , dbaln_cds.cpp , dbaln_fungal.cpp , dbaln_nr.cpp
• bufferGenomicFromFile() : pfogfile.cpp
• bufferProtein() : dbaln_fungalrmsimp.cpp , dbaln_fungalbt.cpp , dbaln_fungal.cpp
• bufferProteins() : pfog.cpp , pfogmultipledb.cpp
• bufferProteinSeq() : compnr2gentropy.cpp , rmsimpmatch.cpp
• bufferProteinsFromFile() : pfogmultipledb.cpp , pfog.cpp , pfogfile.cpp
• bufferQueryProteins() : chimeradetect_mysql.cpp
• bufferQueryProteinsVector() : chimeradetect_mysql.cpp
• bufferTargetProteins() : chimeradetect_mysql.cpp
• bufferTargetProteins2() : chimeradetect_mysql.cpp
• BUFFSIZE : icat.c
• BUFSIZE : prnt.cpp
• buildGeneCluster() : nrep.cpp
• buildGeneInfo() : buildjgitranscript.cpp
• BWD : sim4.h