encoding.cpp File Reference

Defines
#define	_   (-1)
Enumerations
enum	{ Nfasta_bad = 0, Nfasta_nt = 1, Nfasta_ws = 2, Nfasta_amb = 3 }
Variables
static const char	rcsid []
const unsigned char	nfasta_ctype [257]
const unsigned char	dna_complement [257]

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Define Documentation

#define _   (-1)

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Enumeration Type Documentation

anonymous enum

Enumerator:

Nfasta_bad
Nfasta_nt
Nfasta_ws
Nfasta_amb

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Variable Documentation

const unsigned char dna_complement

Initial value:

 
  "                                                                "
  " TVGH  CD  M KN   YSA BWXR       tvgh  cd  m kn   ysa bwxr      "
  "                                                                "
  "                                                                "

const unsigned char nfasta_ctype

Initial value:

 {
 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 2, 0, 2, 2, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 0, 0, 0, 0, 0,
 0, 1, 3, 1, 3, 0, 0, 1, 3, 0, 0, 3, 0, 3, 1, 0,
 0, 0, 3, 3, 1, 0, 3, 3, 1, 3, 0, 0, 0, 0, 0, 0,
 0, 1, 3, 1, 3, 0, 0, 1, 3, 0, 0, 3, 0, 3, 1, 0,
 0, 0, 3, 3, 1, 0, 3, 3, 1, 3, 0, 0, 0, 0, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
}

const char rcsid[] [static]

Initial value:

"$Id: encoding.cpp,v 1.1.1.1 2007-07-13 03:44:06 kzhou Exp $"