dbaln_chimerarmsimp.cpp File Reference

#include "mysql++.h"
#include <string>
#include "bioseq.h"
#include "dynaln.h"
#include <math.h>
#include <fstream>
#include "dbinfo.h"
#include <boost/accumulators/accumulators.hpp>
#include <boost/accumulators/statistics/stats.hpp>
#include <boost/accumulators/statistics/mean.hpp>
#include <boost/accumulators/statistics/moment.hpp>
#include <boost/accumulators/statistics/variance.hpp>
#include "dbalnhelper.h"
#include <boost/thread/thread.hpp>
#include <boost/thread/condition.hpp>
#include "strformat.h"

Classes
class	loadprt
class	loadpair
class	alignmentRunner
Typedefs
typedef boost::mutex	mutex
Functions
pair< double, double >	computeZvalue (Protein &p1, Protein &p2, int n)
void	createTmpTable (const string &tab, mysqlpp::Connection &conn)
int	main (int argc, char *argv[])
Variables
boost::mutex	io_mutex

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Typedef Documentation

typedef boost::mutex mutex

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Function Documentation

pair<double,double> computeZvalue	(	Protein &	p1,
		Protein &	p2,
		int	n
	)

void createTmpTable	(	const string &	tab,
		mysqlpp::Connection &	conn
	)

int main	(	int	argc,
		char *	argv[]
	)

References MysqlDBInfo::getAuthenInfo(), MysqlDBInfo::getPassword(), MysqlDBInfo::getUser(), join(), passwd, alignmentRunner::releaseMemory(), and user.

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Variable Documentation

boost::mutex io_mutex

Referenced by alignmentRunner::operator()(), loadpair::operator()(), and loadprt::operator()().