Class Index

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A	DateException	HalfAlignInterval	mRNA	Relrow_eq2
accession	DBInfo	HalfAlignPile	mRNAModel	Relrow_less
aceconnections	dbinfo	hash_node	msp	Relrow_lessLgcov
acedbinfo	Dbstat	hatrees	Mydatabase	Relrow_lessMatchlen
AceException	dbtime	head	MysqlDBInfo	Relrow_lessScore
Acenode	divstat	HeadNode	N	Relrow_lessSmcov
Aceobj	DNA	hit	namedlocseg	Resrow
Aceobj (acedb)	DNANotFound	hit::end	njtree	Result
Aceobj::AceobjNode (acedb)	DRgreater	I	node	RNAModel
Aceobj::DumpStore (acedb)	dseq	Inpress	Noschain	S
aceparam	DumpCDSLoadFile	InputColumn	notlessMatchQueryBegin	scorepair
afterMatchQuery	dumpClusterPrt	inputend	O	SEQALN_CONSTANTS
alignment	dumpClusterTitle	inputException	Online	SEQALN_IO
alignmentRunner	dyaln	Intabcol	Orgload	SEQALN_LSTRUCT
alignpos	Dynaln	Interval	OutsideGenomicSequence	SEQALN_PROFILE
Alignseg	E	IntervalChain	P	SEQALN_PVALUE
Alignsegex	edit	IntervalPile	parerr	SEQALN_RESULTS
aln	edit_script	intnode	parsererror	SEQALN_SEQUENCE
Alnparam	edit_script_list	intron	Patent	SEQALN_SIJ
alnrange	ESTAssembly	InvalidJGIModel	pepNotFound	seqelem
Alnrange	ESTCombined	InvalidModel	PfogParameters	seqinfo
alnsummary	ESTModel	J	pgdbinfo	Seqrange
Alnview	exon	JGIModel	pointers	seqrslt
Altranscript	ExondirectionError	jinfo	PointOutChain	ServerSocket
AQLException	ExtractEnd	Journal	pregcut	sim4_stats
argv_scores	F	journal	Progparam	sim4Args
avgrange	featErr	K	ProgParam	SimpleSelect
B	featerr	kzseq	ProgParameters	SNavgstd
Badinput	featLocErr	L	protein	Socket
beforeMatchQuery	feature	Lale	Protein	SocketException
bioseq	Fetchaceprt	lessGraphNodePtr	ProteinTable	spliced
bioseqexception	FitNgidentity	lgraph	prt	SplitResult
BlastParameter	FPGModel	Linkbox	Q	stddev
Blmodel	fpkey	Linkmatch	qualif	Subclparam
book	func	lnode	R	Submission
Book	G	LoadCDSFromOneDB	Range	suml
Boxchain	gbdate	loadpair	RangeChain	T
C	gbdnaseq	loadprt	rangePair	Tblastn
cadbc	gberr	locseg	Rangewid	Tblastnmy
CDSExon	gbprt	LSDynaln	Ref	Thesis
CDSload	gbprtseq	ltAlignsegexBeginYPtr	ref	time
ChainAvgrange	gbreferr	ltAlignsegexEndYPtr	Reference	trainer
ClientSocket	gbseq	ltAlignsegYXlen	reference	TranscriptExon
clusmethod	gconst	ltMatchQueryBeginPtr	refloc	U
cluster	gdiagnosis	ltrie	Refreader	Unpublished
Clusterdump	GeneModel	M	Refwithty	V
cmpMatchTbeginInt	genetics	M8Match	Region	Valence
cmpMatchTbeginIntPtr	GenModel	M8MatchChain	region	ValNode
cmpMatchTendInt	gentree	M8MatchEX	RegionInt	version
cmpMatchTendIntPtr	Gmapalnseg	match	RegionStr	vertexinfo
cmpQueryPtr	Gmapath	Match	Relmin	W
cmpTargetDirectionalPtr	Gmapres	MatchQueryLessThan	Relrow	WeatherPainter
cmpTargetPtr	GModel	Matrix	Relrow_eq1	WeatherWizard
codon	Graph	MD5	Relrow_eq1Lgcov	word
coordinates	GraphNode	mgsaln	Relrow_eq1Matchlen	wordList
Cutoff	group	Model	Relrow_eq1Score	_
D	gstat	ModelFactory	Relrow_eq1Smcov	_MSP
Date	H	ModmRNAvalidate

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