chimeradetect.cpp File Reference

#include "alnrange.h"
#include <iostream>
#include <string>
#include <vector>
#include <fstream>
#include <sstream>
#include "libpq++.h"

Enumerations
enum	prgtask { CHECKDB, QCDB }
Functions
void	checkcluster (const string &clid, PgDatabase *pgdb, int olpmg, const string &alntab)
void	checkclusterFromStream (istream &ins)
void	checkchimera (PgDatabase *pgdb, int olpmg, const string &alntab, const string &matchtab)
int	ischimera (PgDatabase *pgdb, int olpmg, const string &matchtab)
int	main (int argc, char *argv[])

---

Enumeration Type Documentation

enum prgtask

Enumerator:

CHECKDB
QCDB

---

Function Documentation

void checkchimera	(	PgDatabase *	pgdb,
		int	olpmg,
		const string &	alntab,
		const string &	matchtab
	)

Referenced by main().

void checkcluster	(	const string &	clid,
		PgDatabase *	pgdb,
		int	olpmg,
		const string &	alntab
	)

Referenced by main().

void checkclusterFromStream

(

istream &

ins

)

Referenced by main().

int ischimera	(	PgDatabase *	pgdb,
		int	olpmg,
		const string &	matchtab
	)

Referenced by main().

int main	(	int	argc,
		char *	argv[]
	)

References checkchimera(), checkcluster(), checkclusterFromStream(), CHECKDB, ifstream(), ischimera(), and QCDB.