alnrange.cpp File Reference

#include "alnrange.h"
#include <algorithm>
#include <iomanip>
#include <sstream>
#include <cmath>
#include <cstring>

Functions
ostream &	operator<< (ostream &ous, const alnrange &r)
ostream &	operator<< (ostream &ous, const avgrange &ar)

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Function Documentation

ostream& operator<<	(	ostream &	ous,
		const avgrange &	ar
	)

References avgrange::begin, avgrange::end, avgrange::getBegin(), avgrange::getCov(), avgrange::getEnd(), avgrange::getMedianCov(), avgrange::getNg(), avgrange::getScore(), and avgrange::n.

ostream& operator<<	(	ostream &	ous,
		const alnrange &	r
	)

this function is not very useful, further more itoa is not implemented in this stdlib.h list<string> rangePair::fieldsAsList() const { list<string> tmp; char buff[12]; tmp.push_back(itoa(begin,buff)); tmp.push_back(itoa(end,buff)); tmp.push_back(gcvt(score,10,buff)); tmp.push_back(gcvt(cov,3,buff)); tmp.push_back(tprtid); tmp.push_back(itoa(tmodelid,10,buff)); tmp.push_back(tgenomicid); tmp.push_back(tstrand); tmp.push_back(itoa(tstart,10,buff)); tmp.push_back(itoa(tend,10,buff)); tmp.push_back(gcvt(tcov,3,buff)); return tmp; }

References alnrange::asTabedString().