Xtend1.cpp File Reference

#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "psublast.h"
#include "sim4.h"
#include "Xtend1.h"
#include "sim4b1.h"

Functions
static void	free_coords (coords ***, int)
int	Xextend_bw (const char *s1, const char *s2, int m, int n, int offset1, int offset2, int *line1, int *line2)
int	Xextend_fw (const char *s1, const char *s2, int m, int n, int offset1, int offset2, int *line1, int *line2)
Variables
static const char	rcsid [] = "$Id: Xtend1.cpp,v 1.1.1.1 2007-07-13 03:44:06 kzhou Exp $"

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Function Documentation

static void free_coords	(	coords ***	val,
		int	size
	)			[static]

Referenced by Xextend_bw(), and Xextend_fw().

int Xextend_bw	(	const char *	s1,
		const char *	s2,
		int	m,
		int	n,
		int	offset1,
		int	offset2,
		int *	line1,
		int *	line2
	)

References ckalloc(), free_coords(), good_ratio(), last_AC, last_AG, link_to_data_list(), upper(), and ValNodeFreeData().

int Xextend_fw	(	const char *	s1,
		const char *	s2,
		int	m,
		int	n,
		int	offset1,
		int	offset2,
		int *	line1,
		int *	line2
	)

References ckalloc(), free_coords(), good_ratio(), last_CT, last_GT, link_to_data_list(), upper(), and ValNodeFreeData().

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Variable Documentation

const char rcsid[] = "$Id: Xtend1.cpp,v 1.1.1.1 2007-07-13 03:44:06 kzhou Exp $" [static]